STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0791KEGG: sse:Ssed_3792 putative lipoprotein. (381 aa)    
Predicted Functional Partners:
Swoo_0792
PFAM: protein of unknown function DUF1111; KEGG: sse:Ssed_3791 protein of unknown function DUF1111.
 
  
 0.954
Swoo_0790
KEGG: sse:Ssed_3793 hypothetical protein.
 
     0.878
Swoo_0775
PFAM: MltA-interacting MipA family protein; KEGG: sse:Ssed_3808 hypothetical protein.
  
     0.647
Swoo_1308
PFAM: protein of unknown function DUF81; KEGG: shn:Shewana3_3118 protein of unknown function DUF81.
  
     0.640
Swoo_2993
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_0485 TonB-dependent receptor.
  
     0.573
Swoo_4131
KEGG: sse:Ssed_3969 hypothetical protein.
  
     0.553
Swoo_4255
KEGG: sse:Ssed_0707 putative FG-GAP repeat lipoprotein.
  
     0.512
Swoo_0541
KEGG: sse:Ssed_0660 hypothetical protein.
  
     0.489
Swoo_1398
KEGG: cps:CPS_2707 putative lipoprotein.
  
     0.486
Swoo_1801
KEGG: sse:Ssed_2843 Ig domain protein, group 1 domain protein.
  
     0.480
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.