STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0795PFAM: glycosyl transferase group 1; KEGG: sse:Ssed_3788 glycosyltransferase. (354 aa)    
Predicted Functional Partners:
Swoo_1696
PFAM: polysaccharide biosynthesis protein; KEGG: sse:Ssed_2949 polysaccharide biosynthesis protein.
 
  
 0.795
Swoo_0698
PFAM: peptidase S15; KEGG: cbe:Cbei_3182 alpha/beta superfamily-like hydrolase.
   
 
 0.779
Swoo_1694
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: sse:Ssed_2951 glycosyl transferase, WecB/TagA/CpsF family; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; glycosyl transferase WecB/TagA/CpsF.
 
 
 0.752
Swoo_1695
PFAM: glycosyl transferase family 2; KEGG: sse:Ssed_2950 glycosyl transferase, family 2.
 
 
 0.688
Swoo_1664
PFAM: sugar transferase; KEGG: sdn:Sden_2648 undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.659
Swoo_1697
KEGG: sse:Ssed_2948 hypothetical protein.
 
  
 0.654
Swoo_1682
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.649
Swoo_0794
KEGG: sse:Ssed_3789 hypothetical protein.
       0.639
Swoo_0793
KEGG: sse:Ssed_3790 protoporphyrinogen oxidase.
       0.607
Swoo_1698
KEGG: sse:Ssed_2947 hypothetical protein.
 
  
 0.592
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.