STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0798TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE domain protein; KEGG: sse:Ssed_3784 putative sensory transduction system, regulatory protein. (550 aa)    
Predicted Functional Partners:
Swoo_2945
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: sfr:Sfri_1418 diguanylate cyclase/phosphodiesterase.
 
  
 0.833
Swoo_0618
Diguanylate cyclase/phosphodiesterase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cth:Cthe_0408 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
 0.822
Swoo_0439
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sse:Ssed_4169 diguanylate cyclase.
 
  
 0.821
Swoo_0292
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: sse:Ssed_0441 sensory box protein.
 
  
 0.816
Swoo_3022
KEGG: sse:Ssed_1633 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
 0.813
Swoo_0256
KEGG: sse:Ssed_0257 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 
 0.809
Swoo_2349
Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: vvy:VVA0712 hypothetical protein.
 
  
 0.795
Swoo_2622
PFAM: EAL domain protein; KEGG: sse:Ssed_1968 diguanylate phosphodiesterase.
 
  
 0.788
Swoo_1051
Diguanylate phosphodiesterase; PFAM: EAL domain protein; phosphotransferase system EIIC; KEGG: slo:Shew_0919 diguanylate phosphodiesterase.
 
  
 0.784
Swoo_4422
Diguanylate cyclase/phosphodiesterase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: sse:Ssed_0539 diguanylate cyclase/phosphodiesterase.
 
  
 0.782
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.