STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0801PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sse:Ssed_3781 hypothetical protein. (355 aa)    
Predicted Functional Partners:
Swoo_0887
KEGG: sse:Ssed_0885 hypothetical protein.
  
     0.757
Swoo_0910
KEGG: sse:Ssed_3510 hypothetical protein.
  
     0.676
Swoo_0802
KEGG: sse:Ssed_3780 hypothetical protein.
       0.675
Swoo_3084
PFAM: porin Gram-negative type; KEGG: sse:Ssed_2557 porin, gram-negative type.
  
     0.618
Swoo_1946
KEGG: sse:Ssed_2676 hypothetical protein.
  
     0.616
Swoo_0726
KEGG: sse:Ssed_3834 hypothetical protein.
  
     0.612
Swoo_3298
KEGG: sse:Ssed_3177 hypothetical protein.
  
     0.612
Swoo_3857
KEGG: sfr:Sfri_3645 putative lipoprotein.
  
     0.612
Swoo_3331
PFAM: SEC-C motif domain protein; KEGG: sse:Ssed_1324 sec-C motif domain protein.
  
     0.575
Swoo_3907
PFAM: FAD dependent oxidoreductase; KEGG: cps:CPS_0260 hypothetical protein.
  
     0.557
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.