STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0809KEGG: cps:CPS_2231 hypothetical protein. (237 aa)    
Predicted Functional Partners:
Swoo_1937
KEGG: sse:Ssed_2682 conserved hypothetical ABC transporter protein.
  
     0.680
Swoo_0810
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cyb:CYB_0892 oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.580
Swoo_2121
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_2495 integral membrane sensor signal transduction histidine kinase.
  
     0.555
Swoo_1073
KEGG: cps:CPS_3074 cytochrome P460.
  
     0.549
Swoo_3985
KEGG: sbm:Shew185_3168 hypothetical protein.
  
     0.512
Swoo_3508
KEGG: sse:Ssed_3338 conserved hypothetical amino acid ABC transporter.
  
     0.503
Swoo_4404
KEGG: sse:Ssed_0556 MSHA biogenesis protein MshP.
  
     0.490
Swoo_2394
KEGG: sse:Ssed_2227 hypothetical protein.
  
     0.489
Swoo_3035
KEGG: sse:Ssed_1620 hypothetical protein.
  
     0.481
Swoo_4405
KEGG: slo:Shew_0400 methylation site containing protein.
  
     0.471
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.