Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_0815PFAM: BCCT transporter; KEGG: pin:Ping_2126 BCCT transporter; Belongs to the BCCT transporter (TC 2.A.15) family. (530 aa)    
Predicted Functional Partners:
Swoo_0816
KEGG: vha:VIBHAR_05507 hypothetical protein.
 
     0.740
Swoo_0817
KEGG: pin:Ping_2124 hypothetical protein.
 
     0.702
Swoo_0814
PFAM: peptidase M19 renal dipeptidase; KEGG: vha:VIBHAR_05502 hypothetical protein.
 
     0.643
Swoo_0813
PFAM: Aldehyde Dehydrogenase; KEGG: vha:VIBHAR_05501 hypothetical protein.
     
 0.526
Swoo_0812
PFAM: Endoribonuclease L-PSP; KEGG: pcr:Pcryo_1816 endoribonuclease L-PSP.
       0.444
Swoo_0811
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vha:VIBHAR_05499 transcriptional regulator.
 
     0.441
betI
Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes.
 
  
 0.440
Swoo_0818
PFAM: porin Gram-negative type; KEGG: she:Shewmr4_3228 porin, gram-negative type.
 
     0.424
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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