STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0816KEGG: vha:VIBHAR_05507 hypothetical protein. (572 aa)    
Predicted Functional Partners:
Swoo_0817
KEGG: pin:Ping_2124 hypothetical protein.
 
     0.924
Swoo_0814
PFAM: peptidase M19 renal dipeptidase; KEGG: vha:VIBHAR_05502 hypothetical protein.
 
     0.873
Swoo_0815
PFAM: BCCT transporter; KEGG: pin:Ping_2126 BCCT transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
 
     0.742
Swoo_0108
Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: spl:Spea_4077 peptidase M24.
  
     0.730
Swoo_0813
PFAM: Aldehyde Dehydrogenase; KEGG: vha:VIBHAR_05501 hypothetical protein.
 
     0.710
Swoo_0811
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vha:VIBHAR_05499 transcriptional regulator.
 
     0.709
Swoo_0109
PFAM: Asp/Glu/hydantoin racemase; KEGG: spl:Spea_4076 Asp/Glu racemase.
  
     0.703
Swoo_4285
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_3863 transcriptional regulator, LysR family.
  
     0.613
Swoo_0812
PFAM: Endoribonuclease L-PSP; KEGG: pcr:Pcryo_1816 endoribonuclease L-PSP.
 
     0.485
Swoo_0845
PFAM: peptidase M19 renal dipeptidase; KEGG: slo:Shew_3107 peptidase M19, renal dipeptidase.
 
     0.401
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.