Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_0818PFAM: porin Gram-negative type; KEGG: she:Shewmr4_3228 porin, gram-negative type. (356 aa)    
Predicted Functional Partners:
Swoo_1647
PFAM: VacJ family lipoprotein; KEGG: sse:Ssed_3037 surface lipoprotein-like protein.
   
 
 0.662
Swoo_0834
KEGG: sse:Ssed_3628 hypothetical protein.
  
     0.569
Swoo_3454
PFAM: porin Gram-negative type; KEGG: slo:Shew_2750 porin, gram-negative type.
  
  
  0.540
Swoo_1281
PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: slo:Shew_1090 OmpA/MotB domain protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
   
 0.539
Swoo_4513
PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: spl:Spea_0456 OmpA domain protein transmembrane region-containing protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
   
 0.539
Swoo_0817
KEGG: pin:Ping_2124 hypothetical protein.
 
     0.508
Swoo_2793
PFAM: porin Gram-negative type; KEGG: hha:Hhal_2050 porin, gram-negative type.
  
  
  0.502
Swoo_1277
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sse:Ssed_1182 hemerythrin HHE cation binding domain protein.
  
     0.496
Swoo_4057
PFAM: protein of unknown function UPF0153; KEGG: ppr:PBPRA2316 hypothetical protein.
  
     0.446
Swoo_1574
KEGG: sse:Ssed_3108 hypothetical protein.
  
     0.444
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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