Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0843KEGG: sse:Ssed_0849 hypothetical protein. (393 aa)    
Predicted Functional Partners:
Swoo_0844
PFAM: peptidase S15; peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sfr:Sfri_3832 peptidase S9, prolyl oligopeptidase active site domain protein.
       0.528
Swoo_0842
KEGG: vfi:VF1637 hypothetical protein.
       0.493
Swoo_0845
PFAM: peptidase M19 renal dipeptidase; KEGG: slo:Shew_3107 peptidase M19, renal dipeptidase.
 
     0.437
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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