STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0847TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vfi:VF1090 transporter. (635 aa)    
Predicted Functional Partners:
Swoo_0846
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: vfi:VF1089 immunogenic protein.
 
    0.940
Swoo_1735
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bpt:Bpet2230 putative membrane protein (TRAP-type transport system, large permease component).
  
     0.708
Swoo_0848
Hypothetical protein.
       0.468
Swoo_1726
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sse:Ssed_2908 TRAP dicarboxylate transporter, DctP subunit.
  
     0.462
Swoo_1732
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bbr:BB3002 putative transport protein.
  
     0.444
Swoo_3520
PFAM: nucleoside recognition domain protein; KEGG: sse:Ssed_3353 nucleoside recognition domain protein.
  
     0.423
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.