STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0856PFAM: protein of unknown function DUF1568; KEGG: sse:Ssed_3659 protein of unknown function DUF1568. (347 aa)    
Predicted Functional Partners:
Swoo_2125
TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: sse:Ssed_2491 sortase family protein.
  
     0.574
Swoo_0796
PFAM: DSBA oxidoreductase; KEGG: sse:Ssed_3787 DsbA oxidoreductase.
  
   
 0.472
Swoo_2124
LPXTG-motif cell wall anchor domain protein; KEGG: sse:Ssed_2492 vault protein inter-alpha-trypsin domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: von Willebrand factor type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa.
  
     0.447
Swoo_4926
KEGG: sse:Ssed_4507 hypothetical protein.
  
     0.409
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.