Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0860PFAM: aldo/keto reductase; KEGG: sse:Ssed_0855 aldo/keto reductase. (347 aa)    
Predicted Functional Partners:
Swoo_3900
PFAM: histone deacetylase superfamily; KEGG: vvy:VV1156 histone deacetylase/AcuC/AphA family protein.
   
  0.723
aqpZ
MIP family channel protein; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.718
Swoo_0861
PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: sse:Ssed_0856 transcriptional regulator, MarR family.
 
    0.641
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
    
 
 0.587
Swoo_4097
PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: she:Shewmr4_2799 protein of unknown function DUF405.
      
 0.582
Swoo_0859
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.529
Swoo_0951
PFAM: Ankyrin; KEGG: tva:TVAG_185910 ankyrin repeat protein, putative.
  
 
 
 0.495
Swoo_0858
PFAM: Fe-S metabolism associated SufE; KEGG: sse:Ssed_0853 Fe-S metabolism associated SufE.
 
     0.436
Swoo_0797
PFAM: heat shock protein DnaJ domain protein; KEGG: sse:Ssed_3786 heat shock protein DnaJ domain protein.
  
 
   0.431
Swoo_0764
PFAM: Ankyrin; KEGG: hch:HCH_04005 FOG: ankyrin repeat.
  
 
 
 0.425
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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