Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0867PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: sse:Ssed_0863 protein of unknown function DUF306, MetA and HslJ. (137 aa)    
Predicted Functional Partners:
Swoo_0554
KEGG: sse:Ssed_4083 outer membrane efflux family protein, putative.
  
 
   0.631
Swoo_0868
KEGG: sse:Ssed_0865 diguanylate cyclase.
       0.527
Swoo_0909
KEGG: sse:Ssed_3511 hypothetical protein.
  
     0.444
Swoo_0869
TIGRFAM: diguanylate cyclase; KEGG: sse:Ssed_0866 GGDEF domain protein.
 
     0.442
Swoo_3719
KEGG: sse:Ssed_3496 hypothetical protein.
  
     0.429
Swoo_4394
PFAM: outer membrane efflux protein; KEGG: shn:Shewana3_3640 outer membrane efflux protein.
  
 
   0.425
Swoo_0870
KEGG: sse:Ssed_0867 acetyltransferase, GNAT family.
 
     0.408
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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