Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Swoo_0888Putative diguanylate cyclase; SMART: PAS domain containing protein; KEGG: sse:Ssed_0886 putative PAS/PAC sensor protein. (738 aa)    
Predicted Functional Partners:
Swoo_1960
KEGG: pin:Ping_3719 sensor histidine kinase with ATPase domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.527
Swoo_0889
PFAM: Radical SAM domain protein; KEGG: sse:Ssed_0887 radical SAM domain protein.
       0.484
Swoo_1704
Multi-sensor hybrid histidine kinase; KEGG: sse:Ssed_2941 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
   
 
 0.437
Swoo_0979
PFAM: nitrogen regulatory protein P-II; KEGG: sse:Ssed_0933 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 
 0.400
Swoo_1181
PFAM: nitrogen regulatory protein P-II; KEGG: shn:Shewana3_0779 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 
 0.400
Swoo_1303
PFAM: nitrogen regulatory protein P-II; KEGG: slo:Shew_1110 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 
 0.400
Swoo_2760
KEGG: sse:Ssed_1828 putative nitrogen regulatory protein P-II.
  
 
 0.400
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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