Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Swoo_0889PFAM: Radical SAM domain protein; KEGG: sse:Ssed_0887 radical SAM domain protein. (200 aa)    
Predicted Functional Partners:
Swoo_0520
PFAM: TatD-related deoxyribonuclease; KEGG: sse:Ssed_4103 TatD-related deoxyribonuclease.
      0.901
Swoo_1985
TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: sse:Ssed_2645 hydrolase, TatD family.
      0.901
Swoo_3552
PFAM: TatD-related deoxyribonuclease; KEGG: sse:Ssed_3381 TatD-related deoxyribonuclease.
     0.880
Swoo_2253
PFAM: FMN-binding domain protein; KEGG: cps:CPS_1884 putative regulatory protein NosR.
  
  
 0.609
Swoo_4254
KEGG: sse:Ssed_3588 decaheme cytochrome c.
 
    0.539
Swoo_0890
PFAM: acriflavin resistance protein; KEGG: sse:Ssed_0888 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.518
Swoo_0891
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_0889 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.518
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
 
    0.517
Swoo_0231
TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: sse:Ssed_0227 cytochrome c family protein.
  
     0.491
Swoo_0888
Putative diguanylate cyclase; SMART: PAS domain containing protein; KEGG: sse:Ssed_0886 putative PAS/PAC sensor protein.
       0.484
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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