STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0890PFAM: acriflavin resistance protein; KEGG: sse:Ssed_0888 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1053 aa)    
Predicted Functional Partners:
Swoo_0891
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_0889 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.962
Swoo_2468
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sse:Ssed_2167 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.829
Swoo_1830
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_2820 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.602
Swoo_0190
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sse:Ssed_0211 membrane-fusion protein-like protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.566
Swoo_4143
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: vvu:VV1_2876 membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.545
Swoo_4314
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_0630 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.528
Swoo_0889
PFAM: Radical SAM domain protein; KEGG: sse:Ssed_0887 radical SAM domain protein.
       0.518
Swoo_1570
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_3112 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.496
Swoo_4144
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: vfi:VF1183 acriflavin resistance periplasmic protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.493
Swoo_2179
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_2428 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.487
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.