STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0904PFAM: beta-lactamase; KEGG: spc:Sputcn32_0856 beta-lactamase. (374 aa)    
Predicted Functional Partners:
Swoo_2118
PFAM: beta-lactamase; KEGG: sse:Ssed_2498 beta-lactamase.
  
   
 0.753
Swoo_0905
KEGG: sse:Ssed_3515 putative manganese transporter.
       0.675
Swoo_2954
PFAM: beta-lactamase domain protein; KEGG: spl:Spea_1635 beta-lactamase domain protein.
      
 0.637
Swoo_0903
PFAM: protein of unknown function DUF1456; KEGG: sse:Ssed_3517 protein of unknown function DUF1456.
       0.496
Swoo_2324
KEGG: sse:Ssed_2291 serine-type D-Ala-D-Ala carboxypeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C.
 
   
 0.495
Swoo_3174
SMART: Dystroglycan-type cadherin domain protein; KEGG: sdn:Sden_3728 cadherin.
  
     0.453
Swoo_0845
PFAM: peptidase M19 renal dipeptidase; KEGG: slo:Shew_3107 peptidase M19, renal dipeptidase.
 
    0.450
Swoo_4565
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; dienelactone hydrolase; KEGG: spl:Spea_3841 peptidase S9 prolyl oligopeptidase active site domain protein.
  
     0.435
Swoo_0529
PFAM: peptidase S15; peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sbl:Sbal_0143 peptidase S9, prolyl oligopeptidase active site domain protein.
  
     0.418
Swoo_4261
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: ilo:IL1172 secreted dipeptidyl aminopeptidase.
  
     0.408
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.