STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0905KEGG: sse:Ssed_3515 putative manganese transporter. (424 aa)    
Predicted Functional Partners:
Swoo_0904
PFAM: beta-lactamase; KEGG: spc:Sputcn32_0856 beta-lactamase.
       0.675
Swoo_1371
KEGG: pin:Ping_1949 hypothetical protein.
  
     0.443
Swoo_0903
PFAM: protein of unknown function DUF1456; KEGG: sse:Ssed_3517 protein of unknown function DUF1456.
       0.440
Swoo_4332
PFAM: ABC-3 protein; KEGG: sse:Ssed_0618 ABC-3 protein.
   
  
 0.406
Swoo_1731
PFAM: protein of unknown function DUF1445; KEGG: vfi:VF1377 hypothetical protein; Belongs to the D-glutamate cyclase family.
  
  
 0.403
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.