STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0909KEGG: sse:Ssed_3511 hypothetical protein. (133 aa)    
Predicted Functional Partners:
Swoo_3719
KEGG: sse:Ssed_3496 hypothetical protein.
  
     0.699
Swoo_3990
KEGG: spl:Spea_3317 conserved hypothetical protein.
  
     0.577
Swoo_4297
KEGG: shm:Shewmr7_0124 hypothetical protein; Belongs to the BI1 family.
  
     0.553
Swoo_0910
KEGG: sse:Ssed_3510 hypothetical protein.
  
    0.526
Swoo_2201
Glucan 1,4-alpha-glucosidase; PFAM: glycoside hydrolase 15-related; Glucodextranase N; KEGG: slo:Shew_1873 glucan 1,4-alpha-glucosidase.
  
     0.512
Swoo_3047
KEGG: sse:Ssed_1602 hypothetical protein.
   
    0.506
Swoo_0908
KEGG: sse:Ssed_3512 hypothetical protein.
       0.487
Swoo_0092
KEGG: sse:Ssed_0129 hypothetical protein.
  
     0.485
Swoo_3307
KEGG: sse:Ssed_1345 hypothetical protein.
  
     0.448
Swoo_0867
PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: sse:Ssed_0863 protein of unknown function DUF306, MetA and HslJ.
  
     0.444
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.