STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0910KEGG: sse:Ssed_3510 hypothetical protein. (266 aa)    
Predicted Functional Partners:
mnmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
    0.770
Swoo_0887
KEGG: sse:Ssed_0885 hypothetical protein.
  
     0.767
Swoo_4829
KEGG: sse:Ssed_4436 hypothetical protein.
  
     0.719
Swoo_0779
KEGG: sse:Ssed_3804 hypothetical protein.
  
     0.716
Swoo_0342
PFAM: Sporulation domain protein; KEGG: sse:Ssed_4263 sporulation domain protein.
  
     0.715
Swoo_3298
KEGG: sse:Ssed_3177 hypothetical protein.
  
     0.712
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
     0.699
Swoo_4489
KEGG: sse:Ssed_0473 hypothetical protein.
  
     0.696
Swoo_0801
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sse:Ssed_3781 hypothetical protein.
  
     0.676
Swoo_0232
KEGG: sse:Ssed_0228 outer membrane protein.
  
     0.675
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.