Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene co-occurrence
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Swoo_0918Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; WD40 domain protein beta Propeller; KEGG: saz:Sama_0607 putative transcriptional regulator, CadC. (725 aa)    
Predicted Functional Partners:
Swoo_0917
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.476
Swoo_1281
PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: slo:Shew_1090 OmpA/MotB domain protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
 
 0.462
Swoo_2228
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: sse:Ssed_2357 peptidase S9, prolyl oligopeptidase active site domain protein.
  
    0.462
Swoo_4513
PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: spl:Spea_0456 OmpA domain protein transmembrane region-containing protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
 
 0.462
Swoo_0919
Hypothetical protein.
       0.443
Swoo_2922
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 
 0.409
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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