node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Swoo_0921 | Swoo_0922 | Swoo_0921 | Swoo_0922 | PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_0823 methyltransferase type 12. | KEGG: sse:Ssed_0824 hypothetical protein. | 0.787 |
Swoo_0921 | nuoC | Swoo_0921 | Swoo_2862 | PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_0823 methyltransferase type 12. | NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.816 |
Swoo_0921 | rpsD | Swoo_0921 | Swoo_4666 | PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_0823 methyltransferase type 12. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.790 |
Swoo_0921 | rpsE | Swoo_0921 | Swoo_4673 | PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_0823 methyltransferase type 12. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.930 |
Swoo_0921 | rpsH | Swoo_0921 | Swoo_4676 | PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_0823 methyltransferase type 12. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.800 |
Swoo_0921 | rpsK | Swoo_0921 | Swoo_4667 | PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_0823 methyltransferase type 12. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.756 |
Swoo_0921 | rpsL | Swoo_0921 | Swoo_4695 | PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_0823 methyltransferase type 12. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.854 |
Swoo_0921 | rpsO | Swoo_0921 | Swoo_3558 | PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_0823 methyltransferase type 12. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.860 |
Swoo_0921 | rpsQ | Swoo_0921 | Swoo_4681 | PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_0823 methyltransferase type 12. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.827 |
Swoo_0921 | rpsS | Swoo_0921 | Swoo_4686 | PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_0823 methyltransferase type 12. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.750 |
Swoo_0922 | Swoo_0921 | Swoo_0922 | Swoo_0921 | KEGG: sse:Ssed_0824 hypothetical protein. | PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_0823 methyltransferase type 12. | 0.787 |
nuoC | Swoo_0921 | Swoo_2862 | Swoo_0921 | NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_0823 methyltransferase type 12. | 0.816 |
nuoC | rpsD | Swoo_2862 | Swoo_4666 | NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.652 |
nuoC | rpsH | Swoo_2862 | Swoo_4676 | NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.560 |
nuoC | rpsK | Swoo_2862 | Swoo_4667 | NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.658 |
nuoC | rpsL | Swoo_2862 | Swoo_4695 | NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.669 |
nuoC | rpsO | Swoo_2862 | Swoo_3558 | NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.603 |
rpsD | Swoo_0921 | Swoo_4666 | Swoo_0921 | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_0823 methyltransferase type 12. | 0.790 |
rpsD | nuoC | Swoo_4666 | Swoo_2862 | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.652 |
rpsD | rpsE | Swoo_4666 | Swoo_4673 | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.998 |