STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0934PFAM: regulatory protein MarR; KEGG: sse:Ssed_0835 transcriptional regulator, MarR family protein. (163 aa)    
Predicted Functional Partners:
Swoo_1516
PFAM: OsmC family protein; KEGG: sse:Ssed_1386 OsmC family protein.
 
  
 0.815
Swoo_0935
PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_0836 FAD dependent oxidoreductase.
       0.764
Swoo_3447
PFAM: glutathione peroxidase; KEGG: sse:Ssed_3298 glutathione peroxidase; Belongs to the glutathione peroxidase family.
 
  
 0.601
Swoo_0936
TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: spl:Spea_0753 chromate transporter, chromate ion transporter (CHR) family.
       0.554
Swoo_0933
KEGG: spl:Spea_0751 conserved hypothetical protein.
       0.465
Swoo_0513
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: sse:Ssed_4110 thioredoxin; Belongs to the thioredoxin family.
  
  
 0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.