STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0934PFAM: regulatory protein MarR; KEGG: sse:Ssed_0835 transcriptional regulator, MarR family protein. (163 aa)    
Predicted Functional Partners:
Swoo_1516
PFAM: OsmC family protein; KEGG: sse:Ssed_1386 OsmC family protein.
 
  
 0.874
Swoo_0935
PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_0836 FAD dependent oxidoreductase.
       0.763
Swoo_0936
TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: spl:Spea_0753 chromate transporter, chromate ion transporter (CHR) family.
       0.554
Swoo_0933
KEGG: spl:Spea_0751 conserved hypothetical protein.
       0.465
Swoo_3447
PFAM: glutathione peroxidase; KEGG: sse:Ssed_3298 glutathione peroxidase; Belongs to the glutathione peroxidase family.
 
  
 0.428
Swoo_4123
PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sse:Ssed_3967 carbamoyl-phosphate synthase L chain, ATP-binding.
  
  
 0.413
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.