Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0938PFAM: pentapeptide repeat protein; Ion transport 2 domain protein; KEGG: sse:Ssed_0839 ion transport 2 domain protein. (327 aa)    
Predicted Functional Partners:
Swoo_0028
KEGG: hch:HCH_00711 hypothetical protein.
  
     0.583
Swoo_0767
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_1437 putative transcriptional regulator, MerR family.
 
     0.545
Swoo_2339
PFAM: GAD-like domain protein; Domain of unknown function DUF1851; KEGG: psp:PSPPH_0317 hypothetical protein.
  
     0.506
prfB
Hypothetical protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.475
Swoo_2650
PFAM: Ion transport 2 domain protein; KEGG: prw:PsycPRwf_2088 ion transport 2 domain protein.
  
     0.424
Swoo_0937
TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sse:Ssed_0838 formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.411
Swoo_4404
KEGG: sse:Ssed_0556 MSHA biogenesis protein MshP.
  
     0.402
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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