STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0941KEGG: sfr:Sfri_2048 L-sorbosone dehydrogenase, putative. (361 aa)    
Predicted Functional Partners:
Swoo_0942
PFAM: pseudouridine synthase; KEGG: sse:Ssed_0843 RNA pseudouridine synthase family protein; Belongs to the pseudouridine synthase RsuA family.
       0.480
Swoo_2896
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_1698 protein of unknown function DUF214.
  
     0.464
Swoo_2898
Arylesterase; PFAM: lipolytic protein G-D-S-L family; KEGG: sse:Ssed_1696 arylesterase.
  
     0.407
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.