Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0946TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_2875 outer membrane protein. (706 aa)    
Predicted Functional Partners:
Swoo_0701
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: cps:CPS_2817 putative regulatory protein.
 
 
 0.915
Swoo_3834
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: cps:CPS_0244 putative regulatory protein.
 
 
 0.762
Swoo_4759
KEGG: sse:Ssed_4369 lipoprotein, putative.
  
 
 0.686
Swoo_0245
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.675
Swoo_3075
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.625
Swoo_4005
TIGRFAM: TonB family protein; KEGG: spl:Spea_3328 TonB family protein.
  
 
 0.625
menF
Isochorismate synthase; Catalyzes the conversion of chorismate to isochorismate.
   
  
 0.619
Swoo_3918
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_3414 TonB-dependent receptor.
  
  
 0.582
Swoo_0094
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spl:Spea_4088 TonB-dependent receptor.
  
   
 0.553
Swoo_1507
PFAM: PepSY-associated TM helix domain protein; KEGG: sfr:Sfri_0204 PepSY-associated TM helix domain protein.
 
  
 0.545
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.