Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0959KEGG: sse:Ssed_0910 alkaline phosphatase. (589 aa)    
Predicted Functional Partners:
folE
PFAM: GTP cyclohydrolase I; KEGG: spl:Spea_3842 GTP cyclohydrolase I.
    
 0.910
Swoo_1159
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.903
Swoo_2892
PFAM: dihydroneopterin aldolase; KEGG: spl:Spea_1664 dihydroneopterin aldolase.
     
 0.903
Swoo_4136
PFAM: Alkaline phosphatase; KEGG: sse:Ssed_3974 alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
  
 0.712
Swoo_1911
Endonuclease/exonuclease/phosphatase; PFAM: PKD domain containing protein; Endonuclease/exonuclease/phosphatase; KEGG: slo:Shew_2170 endonuclease/exonuclease/phosphatase.
  
 0.554
Swoo_0958
PFAM: CBS domain containing protein; KEGG: sse:Ssed_0909 CBS domain containing protein.
       0.506
Swoo_1207
PFAM: Alkaline phosphatase; KEGG: spl:Spea_0989 alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
  
 0.448
Swoo_1349
PFAM: Alkaline phosphatase; KEGG: sse:Ssed_1249 alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
  
 0.448
Swoo_1350
PFAM: Alkaline phosphatase; KEGG: sse:Ssed_1250 alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
  
 0.448
Swoo_0648
Microbial collagenase; PFAM: peptidase domain protein; Peptidase M9A collagenase domain protein; Peptidase M9 domain; KEGG: son:SO_0639 collagenase family.
 
     0.436
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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