STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0963TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: sse:Ssed_2729 conserved hypothetical phosphoesterase. (183 aa)    
Predicted Functional Partners:
Swoo_1327
Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
  
  
 0.860
Swoo_0962
PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: sse:Ssed_0913 aminopeptidase N.
       0.520
Swoo_1706
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sse:Ssed_2939 PHP C-terminal domain protein.
 
     0.473
Swoo_0376
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
  
  
 0.445
Swoo_0048
PFAM: protein of unknown function DUF1488; KEGG: spl:Spea_0041 protein of unknown function DUF1488.
  
     0.439
Swoo_1808
PFAM: protein of unknown function UPF0227; KEGG: sse:Ssed_2836 protein of unknown function UPF0227; Belongs to the UPF0227 family.
 
     0.428
Swoo_0764
PFAM: Ankyrin; KEGG: hch:HCH_04005 FOG: ankyrin repeat.
    
 
 0.409
Swoo_0951
PFAM: Ankyrin; KEGG: tva:TVAG_185910 ankyrin repeat protein, putative.
    
 
 0.409
Swoo_2511
PFAM: Ankyrin; KEGG: eca:ECA3425 putative lipoprotein.
    
 
 0.409
Swoo_3377
KEGG: sse:Ssed_3243 hypothetical protein.
    
 
 0.409
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.