STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0964TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: sse:Ssed_0914 hypothetical protein. (197 aa)    
Predicted Functional Partners:
Swoo_0965
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sse:Ssed_0915 tetratricopeptide TPR_2 repeat protein.
 
   
 0.941
Swoo_3852
KEGG: dps:DP0586 hypothetical protein.
 
   
 0.631
Swoo_3792
Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).
    
 
 0.576
Swoo_1885
PFAM: protein of unknown function DUF1425; KEGG: sse:Ssed_2753 protein of unknown function DUF1425.
  
  
 0.496
Swoo_2336
KEGG: pha:PSHAb0338 homogentisate 1,2-dioxygenase (Homogentisicase) (homogentisate oxygenase) (Homogentisic acid oxidase) [HGD]; TIGRFAM: homogentisate 1,2-dioxygenase; PFAM: homogentisate 12-dioxygenase.
   
    0.442
Swoo_0791
KEGG: sse:Ssed_3792 putative lipoprotein.
  
     0.441
Swoo_3225
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sse:Ssed_1456 enoyl-CoA hydratase/isomerase.
   
    0.436
Swoo_0048
PFAM: protein of unknown function DUF1488; KEGG: spl:Spea_0041 protein of unknown function DUF1488.
  
     0.434
Swoo_2695
PFAM: 17 kDa surface antigen; KEGG: sse:Ssed_1890 17 kDa surface antigen.
 
    0.420
Swoo_0790
KEGG: sse:Ssed_3793 hypothetical protein.
  
     0.417
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.