STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0965PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sse:Ssed_0915 tetratricopeptide TPR_2 repeat protein. (455 aa)    
Predicted Functional Partners:
Swoo_0964
TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: sse:Ssed_0914 hypothetical protein.
 
  
 0.938
Swoo_3851
TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: pvi:Cvib_0158 membrane lipoprotein lipid attachment site.
 
  
 0.698
Swoo_3089
KEGG: sse:Ssed_1563 hypothetical protein; Belongs to the UPF0319 family.
  
     0.641
Swoo_0342
PFAM: Sporulation domain protein; KEGG: sse:Ssed_4263 sporulation domain protein.
  
     0.612
Swoo_3067
Serine/threonine protein kinase; PFAM: NERD domain protein; KEGG: sse:Ssed_1583 hypothetical protein.
  
     0.606
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
  
     0.595
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
     0.595
Swoo_2146
KEGG: sse:Ssed_2470 hypothetical protein.
  
     0.518
Swoo_4131
KEGG: sse:Ssed_3969 hypothetical protein.
  
     0.518
Swoo_2170
PFAM: SirA family protein; KEGG: sse:Ssed_2436 SirA family protein; Belongs to the sulfur carrier protein TusA family.
  
 
   0.509
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.