Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_0967PFAM: WD-40 repeat protein; KEGG: sse:Ssed_0917 WD-40 repeat protein. (319 aa)    
Predicted Functional Partners:
Swoo_1593
PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: sse:Ssed_3091 anti-sigma-28 factor, FlgM.
 
 
 0.897
slyX
PFAM: SlyX family protein; KEGG: sse:Ssed_0916 SlyX family protein; Belongs to the SlyX family.
       0.834
Swoo_3474
PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_3325 OmpA/MotB domain protein.
 
 
 0.819
Swoo_3900
PFAM: histone deacetylase superfamily; KEGG: vvy:VV1156 histone deacetylase/AcuC/AphA family protein.
  
 
 0.818
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
    
 0.789
Swoo_1746
PFAM: Dual specificity protein phosphatase; KEGG: sse:Ssed_2901 dual specificity protein phosphatase.
   
 0.782
Swoo_2029
GTP-binding protein HSR1-related; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
   
 0.776
kdkA
Lipopolysaccharide kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
   
 0.770
Swoo_1012
Bis(5'-nucleosyl)-tetraphosphatase (symmetrical); Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
   
 0.769
gpmI
Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
 0.745
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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