Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_0969PFAM: conserved hypothetical protein; KEGG: sse:Ssed_0928 uncharacterized conserved protein UCP006287; Belongs to the UPF0231 family. (124 aa)    
Predicted Functional Partners:
Swoo_3641
PFAM: Uncharacterized lipoprotein; KEGG: sse:Ssed_3439 uncharacterized lipoprotein.
  
     0.705
Swoo_2768
PFAM: protein of unknown function DUF991; KEGG: sse:Ssed_1819 protein of unknown function DUF991.
  
     0.676
Swoo_1267
TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: sse:Ssed_1172 Trp operon repressor.
  
     0.664
Swoo_2811
KEGG: sse:Ssed_1784 hypothetical protein; Belongs to the UPF0319 family.
  
     0.657
lapA
Protein of unknown function DUF1049; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.580
Swoo_0662
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sse:Ssed_3873 transcriptional regulator, Crp/Fnr family.
    
   0.569
Swoo_3424
PFAM: cyclic nucleotide-binding; KEGG: sse:Ssed_3273 cyclic nucleotide binding protein, putative.
    
   0.569
Swoo_4557
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: pat:Patl_3367 transcriptional regulator, Crp/Fnr family.
    
   0.569
Swoo_2948
PFAM: protein of unknown function DUF1097; KEGG: sse:Ssed_1663 hypothetical protein.
  
     0.514
Swoo_0326
PFAM: protein of unknown function DUF1439; KEGG: sse:Ssed_4279 protein of unknown function DUF1439.
  
     0.501
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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