STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0971Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sse:Ssed_0930 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ. (567 aa)    
Predicted Functional Partners:
Swoo_0970
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sse:Ssed_0929 two component transcriptional regulator, LuxR family.
 
 0.996
Swoo_2637
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sse:Ssed_1951 putative nitrate/nitrite response regulator; NarL.
 
 0.980
Swoo_3747
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; KEGG: cps:CPS_1260 putative nitrate/nitrite DNA-binding response regulator.
 
 0.977
Swoo_0644
PFAM: regulatory protein LuxR; KEGG: she:Shewmr4_0720 transcriptional regulator, LuxR family.
 
 
 0.713
Swoo_2150
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sse:Ssed_2455 two component transcriptional regulator, LuxR family.
 
 
 0.697
Swoo_1880
PFAM: regulatory protein LuxR; KEGG: slo:Shew_1726 transcriptional regulator, LuxR family.
 
 
 0.683
Swoo_4591
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: slo:Shew_3506 two component transcriptional regulator, LuxR family.
 
 
 0.670
Swoo_2245
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: cps:CPS_1932 DNA-binding response regulator.
 
 
 0.642
Swoo_3887
PFAM: regulatory protein LuxR; KEGG: sse:Ssed_3945 transcriptional regulator, LuxR family.
 
 
 0.617
Swoo_2721
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: slo:Shew_1545 two component transcriptional regulator, LuxR family.
 
 
 0.613
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.