STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0978PFAM: isochorismatase hydrolase; KEGG: sse:Ssed_0932 isochorismatase hydrolase. (180 aa)    
Predicted Functional Partners:
menF
Isochorismate synthase; Catalyzes the conversion of chorismate to isochorismate.
  
  
 0.900
Swoo_0696
PFAM: putative esterase; KEGG: sde:Sde_2868 cysteine synthase A.
 
    0.656
Swoo_4495
PFAM: putative esterase; KEGG: spl:Spea_0471 putative esterase.
 
    0.647
Swoo_3542
PFAM: putative esterase; KEGG: slo:Shew_1666 putative esterase.
 
    0.636
Swoo_4845
KEGG: sse:Ssed_4452 hypothetical protein.
  
    0.587
Swoo_0946
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_2875 outer membrane protein.
   
    0.533
Swoo_2070
KEGG: mma:MM_3026 hypothetical protein.
  
    0.526
Swoo_2806
PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: saz:Sama_1540 hypothetical protein.
   
    0.470
Swoo_2259
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: cps:CPS_1892 hypothetical protein.
   
    0.447
Swoo_2270
Flavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
   
    0.447
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.