Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0981PFAM: DSBA oxidoreductase; KEGG: pat:Patl_1112 DsbA oxidoreductase. (441 aa)    
Predicted Functional Partners:
Swoo_2397
KEGG: sal:Sala_0301 putative transcriptional regulator, TetR family.
 
     0.766
Swoo_2398
Glutathione S-transferase-like protein; KEGG: bra:BRADO0919 hypothetical protein.
 
     0.672
Swoo_1517
PFAM: DoxX family protein; KEGG: vfi:VFA0336 hypothetical membrane spanning protein.
  
     0.635
Swoo_0982
KEGG: sse:Ssed_0935 hypothetical protein.
       0.608
Swoo_2406
Hypothetical protein; KEGG: pat:Patl_3336 glutathione S-transferase.
 
     0.582
Swoo_1398
KEGG: cps:CPS_2707 putative lipoprotein.
  
     0.497
Swoo_2993
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_0485 TonB-dependent receptor.
  
     0.496
Swoo_0980
PFAM: Rh family protein/ammonium transporter; KEGG: sse:Ssed_0934 Rh family protein/ammonium transporter.
       0.476
Swoo_0979
PFAM: nitrogen regulatory protein P-II; KEGG: sse:Ssed_0933 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
       0.473
Swoo_0130
PFAM: conserved hypothetical protein; KEGG: sse:Ssed_0151 hypothetical protein.
  
     0.470
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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