STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0992KEGG: sse:Ssed_0942 hypothetical protein. (196 aa)    
Predicted Functional Partners:
Swoo_2576
KEGG: sse:Ssed_2029 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein family 3.
  
     0.595
Swoo_0671
KEGG: sse:Ssed_3864 hypothetical protein.
  
     0.591
Swoo_3044
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sse:Ssed_1608 transcriptional regulator, XRE family.
  
     0.562
Swoo_0991
PFAM: Phosphoglycerate mutase; KEGG: sse:Ssed_0941 hypothetical protein.
       0.538
Swoo_0117
PFAM: MORN variant repeat protein; KEGG: slo:Shew_2461 MORN variant repeat protein.
  
     0.526
Swoo_0130
PFAM: conserved hypothetical protein; KEGG: sse:Ssed_0151 hypothetical protein.
  
     0.526
Swoo_0993
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sse:Ssed_0943 oxidoreductase FAD/NAD(P)-binding domain protein.
       0.519
Swoo_1086
KEGG: sus:Acid_0589 hypothetical protein.
  
     0.515
Swoo_1323
KEGG: sse:Ssed_1223 hypothetical protein.
  
     0.515
Swoo_2062
KEGG: sse:Ssed_2604 hypothetical protein.
  
     0.512
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.