STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0997PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_0946 binding-protein-dependent transport systems inner membrane component. (543 aa)    
Predicted Functional Partners:
Swoo_0996
PFAM: extracellular solute-binding protein family 1; KEGG: spl:Spea_0844 extracellular solute-binding protein family 1.
 
 
 0.998
Swoo_0998
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sse:Ssed_0947 ABC transporter related; Belongs to the ABC transporter superfamily.
 
 
 0.992
Swoo_4010
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spl:Spea_3333 ABC transporter related.
   
  
 0.506
Swoo_4086
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3736 ABC transporter-related protein.
   
  
 0.506
Swoo_4786
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_4395 ABC transporter-related protein; Belongs to the ABC transporter superfamily.
 
  
 0.498
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  
 0.493
Swoo_4079
PFAM: periplasmic binding protein; KEGG: spl:Spea_3374 periplasmic binding protein.
   
  
 0.492
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.