STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1007PFAM: protein of unknown function DUF1212; KEGG: sse:Ssed_0957 protein of unknown function DUF1212. (253 aa)    
Predicted Functional Partners:
Swoo_1008
KEGG: sse:Ssed_0958 hypothetical protein.
  
 0.991
obg
GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
       0.658
Swoo_1009
Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.
       0.640
Swoo_0380
PFAM: protein of unknown function DUF1212; KEGG: sse:Ssed_4220 protein of unknown function DUF1212.
  
  
 0.463
Swoo_3436
PFAM: protein of unknown function DUF437; KEGG: vpa:VPA1414 hypothetical protein; Belongs to the UPF0267 family.
  
     0.462
rpmA
PFAM: ribosomal protein L27; KEGG: shm:Shewmr7_3124 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
       0.452
Swoo_1767
KEGG: sse:Ssed_2881 hypothetical protein.
  
     0.444
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
       0.426
Swoo_1010
KEGG: sse:Ssed_0960 hypothetical protein.
       0.413
Swoo_2948
PFAM: protein of unknown function DUF1097; KEGG: sse:Ssed_1663 hypothetical protein.
  
     0.402
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.