STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1010KEGG: sse:Ssed_0960 hypothetical protein. (128 aa)    
Predicted Functional Partners:
Swoo_3461
KEGG: sse:Ssed_3312 hypothetical protein.
  
     0.774
Swoo_3296
KEGG: spl:Spea_2898 conserved hypothetical protein.
  
     0.773
Swoo_1323
KEGG: sse:Ssed_1223 hypothetical protein.
  
     0.772
Swoo_2388
KEGG: sse:Ssed_2236 GCN5-related N-acetyltransferase.
  
     0.768
Swoo_2888
KEGG: sse:Ssed_1703 hypothetical protein.
  
     0.767
Swoo_2709
KEGG: sse:Ssed_1878 hypothetical protein.
  
     0.766
Swoo_0521
KEGG: sse:Ssed_4102 hypothetical protein.
  
     0.765
Swoo_2856
PFAM: RDD domain containing protein; KEGG: sse:Ssed_1722 RDD domain containing protein.
  
     0.765
Swoo_2296
KEGG: sse:Ssed_2314 hypothetical protein.
  
     0.759
Swoo_0983
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_0936 TPR repeat-containing protein.
  
     0.742
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.