STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1024PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_0975 secretion protein HlyD family protein. (378 aa)    
Predicted Functional Partners:
Swoo_1023
KEGG: sse:Ssed_0974 hypothetical protein.
 
   
 0.960
Swoo_4361
PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_0587 hypothetical protein.
  
     0.614
Swoo_0419
PFAM: sulfatase; KEGG: vvy:VVA0661 arylsulfatase A.
  
     0.587
Swoo_1356
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_1255 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.581
Swoo_1025
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: sse:Ssed_0977 AAA ATPase, central domain protein.
       0.578
Swoo_4394
PFAM: outer membrane efflux protein; KEGG: shn:Shewana3_3640 outer membrane efflux protein.
 
 
 0.573
Swoo_0474
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: sse:Ssed_4142 type I secretion outer membrane protein, TolC family.
 
 
 0.536
Swoo_0476
Type I secretion system ATPase; KEGG: sse:Ssed_4140 ABC transporter-related protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase.
  
 
 0.488
Swoo_3807
PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: son:SO_A0049 toxin secretion ABC transporter, ATP-binding subunit/permease protein, putative.
  
 
 0.488
Swoo_4195
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: sse:Ssed_0774 type I secretion outer membrane protein, TolC family.
  
 
 0.486
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.