Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1028PFAM: protein of unknown function DUF1289; KEGG: sse:Ssed_0979 Fe-S protein-like protein. (103 aa)    
Predicted Functional Partners:
Swoo_2301
PFAM: ferredoxin; KEGG: sse:Ssed_2308 ferredoxin.
  
   
 0.692
Swoo_2302
PFAM: ribonucleotide reductase; KEGG: slo:Shew_1945 ribonucleoside-diphosphate reductase.
  
     0.688
Swoo_2303
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
     0.663
Swoo_2885
PFAM: protein of unknown function DUF412; KEGG: sse:Ssed_1706 protein of unknown function DUF412.
  
     0.575
Swoo_1027
KEGG: sse:Ssed_0978 hypothetical protein.
       0.516
Swoo_4459
PFAM: Domain of unknown function DUF1852; KEGG: vpa:VP1992 hypothetical protein.
  
     0.472
Swoo_3669
PFAM: protein of unknown function DUF413; KEGG: slo:Shew_2898 protein of unknown function DUF413.
  
     0.451
Swoo_0282
PFAM: protein of unknown function Spy-related; KEGG: sse:Ssed_0280 protein of unknown function, Spy-related.
  
     0.401
Swoo_1032
PFAM: MltA-interacting MipA family protein; KEGG: sse:Ssed_0983 MltA-interacting MipA family protein.
  
     0.400
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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