STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1045PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sse:Ssed_0992 glyoxalase/bleomycin resistance protein/dioxygenase. (139 aa)    
Predicted Functional Partners:
Swoo_1046
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ilo:IL1591 glyoxalase/dioxygenase superfamily protein.
 
     0.776
Swoo_1047
PFAM: NADPH-dependent FMN reductase; KEGG: sse:Ssed_0994 NADPH-dependent FMN reductase.
 
  
 0.748
Swoo_1920
PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_1517 GCN5-related N-acetyltransferase.
  
     0.553
nuoC
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
  
  
 0.482
Swoo_3041
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9 subtilisin propeptide; KEGG: sse:Ssed_1611 peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
     0.478
Swoo_3536
KEGG: vpa:VP1370 hypothetical protein.
 
     0.461
Swoo_1048
Putative transcriptional regulator; PFAM: Helix-turn-helix type 11 domain protein; KEGG: sse:Ssed_0995 hypothetical protein.
       0.459
Swoo_1049
Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sse:Ssed_0996 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.
       0.459
Swoo_4404
KEGG: sse:Ssed_0556 MSHA biogenesis protein MshP.
  
     0.453
birA
biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
  
    0.439
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.