Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Swoo_1047PFAM: NADPH-dependent FMN reductase; KEGG: sse:Ssed_0994 NADPH-dependent FMN reductase. (210 aa)    
Predicted Functional Partners:
Swoo_1045
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sse:Ssed_0992 glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.759
Swoo_1046
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ilo:IL1591 glyoxalase/dioxygenase superfamily protein.
  
  
 0.758
Swoo_1048
Putative transcriptional regulator; PFAM: Helix-turn-helix type 11 domain protein; KEGG: sse:Ssed_0995 hypothetical protein.
  
  
 0.606
Swoo_0554
KEGG: sse:Ssed_4083 outer membrane efflux family protein, putative.
  
   
 0.547
Swoo_1049
Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sse:Ssed_0996 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.
  
    0.547
torD
Cytoplasmic chaperone TorD family protein; Involved in the biogenesis of TorA. Acts on TorA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Belongs to the TorD/DmsD family. TorD subfamily.
  
     0.506
Swoo_1517
PFAM: DoxX family protein; KEGG: vfi:VFA0336 hypothetical membrane spanning protein.
 
    0.497
Swoo_2842
PFAM: DSBA oxidoreductase; KEGG: sse:Ssed_1742 DsbA oxidoreductase.
  
    0.468
Swoo_2244
KEGG: pat:Patl_1868 hypothetical protein.
  
     0.459
Swoo_0380
PFAM: protein of unknown function DUF1212; KEGG: sse:Ssed_4220 protein of unknown function DUF1212.
  
     0.430
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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