Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1058PFAM: Radical SAM domain protein; KEGG: spl:Spea_0898 radical SAM domain protein. (382 aa)    
Predicted Functional Partners:
Swoo_1057
PFAM: protein of unknown function DUF52; KEGG: spl:Spea_0897 protein of unknown function DUF52; Belongs to the MEMO1 family.
     0.947
Swoo_1056
PFAM: AMMECR1 domain protein; KEGG: sse:Ssed_1003 hypothetical protein.
 
     0.918
Swoo_2883
KEGG: sse:Ssed_1708 formate C-acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL.
  
  
 0.577
Swoo_2241
PFAM: iron-containing alcohol dehydrogenase; KEGG: sse:Ssed_2349 iron-containing alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.483
Swoo_1035
PFAM: dehydrogenase E1 component; Transketolase central region; Transketolase domain protein; KEGG: sdn:Sden_3017 transketolase, central region.
   
  
 0.467
Swoo_1875
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sse:Ssed_2765 nitrite reductase (NAD(P)H), large subunit.
  
  
 0.431
Swoo_2012
Pyridoxal-5'-phosphate-dependent protein beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
  
     0.412
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.