Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_1068TIGRFAM: superoxide dismutase, Ni; PFAM: Superoxide dismutase Ni-type; KEGG: cps:CPS_0444 putative nickel-containing superoxide dismutase. (166 aa)    
Predicted Functional Partners:
Swoo_1069
Hypothetical protein.
       0.773
Swoo_1067
KEGG: cps:CPS_0445 hypothetical protein.
     
 0.724
katG
Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
     
 0.564
Swoo_1517
PFAM: DoxX family protein; KEGG: vfi:VFA0336 hypothetical membrane spanning protein.
  
     0.514
Swoo_3394
PFAM: Catalase domain protein; KEGG: sse:Ssed_3251 catalase; Belongs to the catalase family.
     
 0.500
Swoo_3881
PFAM: Catalase domain protein; KEGG: neu:NE1886 catalase; Belongs to the catalase family.
     
 0.500
Swoo_0607
KEGG: ppr:PBPRA2498 hypothetical protein.
  
     0.461
Swoo_1070
KEGG: cps:CPS_0442 hypothetical protein.
       0.410
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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