Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Swoo_1083PFAM: protein of unknown function DUF1449; KEGG: shm:Shewmr7_2900 protein of unknown function DUF1449. (211 aa)    
Predicted Functional Partners:
Swoo_1084
PFAM: band 7 protein; KEGG: slo:Shew_0946 band 7 protein.
 
  
 0.968
Swoo_1082
Carboxypeptidase Taq; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.
     
 0.777
Swoo_4507
PFAM: protein of unknown function DUF107; KEGG: sse:Ssed_0463 protein of unknown function DUF107.
 
  
 0.688
Swoo_1909
PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: sse:Ssed_3630 OmpA domain protein transmembrane region-containing protein.
  
     0.591
Swoo_3481
TIGRFAM: TonB family protein; KEGG: sse:Ssed_3332 TonB family protein.
  
    0.578
Swoo_0722
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: sse:Ssed_3838 phage shock protein A, PspA.
 
  
 0.565
Swoo_3444
KEGG: spl:Spea_1582 conserved hypothetical protein.
  
     0.519
Swoo_3100
TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein; KEGG: slo:Shew_2496 phage shock protein A, PspA.
  
  
 0.497
Swoo_0869
TIGRFAM: diguanylate cyclase; KEGG: sse:Ssed_0866 GGDEF domain protein.
  
     0.494
Swoo_0725
PFAM: protein of unknown function DUF350; KEGG: sse:Ssed_3835 protein of unknown function DUF350.
  
    0.492
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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