Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1084PFAM: band 7 protein; KEGG: slo:Shew_0946 band 7 protein. (604 aa)    
Predicted Functional Partners:
Swoo_1083
PFAM: protein of unknown function DUF1449; KEGG: shm:Shewmr7_2900 protein of unknown function DUF1449.
 
  
 0.968
Swoo_0722
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: sse:Ssed_3838 phage shock protein A, PspA.
 
  
 0.810
Swoo_4507
PFAM: protein of unknown function DUF107; KEGG: sse:Ssed_0463 protein of unknown function DUF107.
  
  
 0.702
Swoo_1082
Carboxypeptidase Taq; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.
     
 0.615
Swoo_0723
KEGG: sse:Ssed_3837 hypothetical protein.
 
  
 0.499
Swoo_3100
TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein; KEGG: slo:Shew_2496 phage shock protein A, PspA.
  
  
 0.497
Swoo_1909
PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: sse:Ssed_3630 OmpA domain protein transmembrane region-containing protein.
  
     0.490
Swoo_3903
TIGRFAM: release factor H-coupled RctB family protein; PFAM: protein of unknown function UPF0027; KEGG: pen:PSEEN0410 hypothetical protein.
  
     0.479
Swoo_2948
PFAM: protein of unknown function DUF1097; KEGG: sse:Ssed_1663 hypothetical protein.
  
     0.449
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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