Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1085KEGG: cps:CPS_2167 hypothetical protein. (180 aa)    
Predicted Functional Partners:
Swoo_1086
KEGG: sus:Acid_0589 hypothetical protein.
       0.773
Swoo_1087
Hypothetical protein.
       0.645
Swoo_1555
KEGG: mbn:Mboo_1713 hypothetical protein.
  
     0.541
Swoo_4274
KEGG: cps:CPS_0687 hypothetical protein.
  
     0.503
Swoo_1046
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ilo:IL1591 glyoxalase/dioxygenase superfamily protein.
  
     0.498
Swoo_3253
PFAM: peptidase M14 carboxypeptidase A; KEGG: cps:CPS_2692 zinc carboxypeptidase family protein.
  
     0.494
Swoo_4255
KEGG: sse:Ssed_0707 putative FG-GAP repeat lipoprotein.
  
     0.494
Swoo_2639
KEGG: sdn:Sden_0777 hypothetical protein.
  
     0.488
Swoo_0991
PFAM: Phosphoglycerate mutase; KEGG: sse:Ssed_0941 hypothetical protein.
  
     0.473
Swoo_4378
KEGG: cps:CPS_3722 hypothetical protein.
  
     0.469
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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