Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_1096Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: sse:Ssed_1024 peptidase M24. (595 aa)    
Predicted Functional Partners:
Swoo_3603
KEGG: sse:Ssed_3421 Xaa-His dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein.
 
 
 0.593
Swoo_1097
PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_1025 major facilitator superfamily MFS_1.
       0.454
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
   0.451
Swoo_3945
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: spl:Spea_3277 CMP/dCMP deaminase zinc-binding.
 
  
 0.439
Swoo_1095
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sse:Ssed_1022 DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family.
   
   0.433
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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