STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1100PFAM: PKD domain containing protein; glycoside hydrolase family 18; Carbohydrate-binding family V/XII; Chitinase A domain protein; SMART: chitinase II; KEGG: sbl:Sbal_3083 chitinase. (863 aa)    
Predicted Functional Partners:
Swoo_0561
Beta-N-acetylhexosaminidase; PFAM: Carbohydrate-binding chitobiase/hexosaminidase-type domain protein; Beta-N-acetylhexosaminidase-like; Glycoside hydrolase, family 20, catalytic core; KEGG: sbn:Sbal195_1432 beta-N-acetylhexosaminidase.
  
  
  0.956
Swoo_1311
Beta-N-acetylhexosaminidase; PFAM: Carbohydrate-binding chitobiase/hexosaminidase-type domain protein; glycoside hydrolase family 20 domain protein; Beta-N-acetylhexosaminidase-like; Glycoside hydrolase, family 20, catalytic core; KEGG: sse:Ssed_1211 beta-N-acetylhexosaminidase.
  
  
  0.955
Swoo_3941
PFAM: Beta-N-acetylhexosaminidase-like; Glycoside hydrolase, family 20, catalytic core; KEGG: spe:Spro_0536 beta-N-acetylhexosaminidase.
  
  
  0.928
Swoo_1018
PFAM: aminoglycoside phosphotransferase; KEGG: sse:Ssed_0968 aminoglycoside phosphotransferase.
     
  0.900
nagZ
Glycoside hydrolase family 3 domain protein; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
     
  0.900
Swoo_2348
Hypothetical protein; KEGG: cvi:CV_2935 probable chitinase A.
     
  0.900
Swoo_1101
Chitinase; PFAM: glycoside hydrolase family 19; Carbohydrate-binding family V/XII; KEGG: aha:AHA_0979 basic endochitinase.
 
     0.871
Swoo_3879
PFAM: chitin-binding domain 3 protein; KEGG: son:SO_1072 chitin-binding protein, putative.
  
     0.753
Swoo_2718
PFAM: Carbohydrate-binding family V/XII; chitin-binding domain 3 protein; KEGG: vvu:VV2_1258 hypothetical protein.
  
     0.729
Swoo_4488
Proprotein convertase P; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; KEGG: vpa:VPA1071 putative extracellular serine protease; Belongs to the peptidase S8 family.
 
     0.679
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.